Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.75■□□□□ 0.91
Chmp6P0C0A3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chmp6P0C0A3 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Chmp6P0C0A3 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chmp6P0C0A3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chmp6P0C0A3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chmp6P0C0A3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chmp6P0C0A3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chmp6P0C0A3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
Chmp6P0C0A3 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Chmp6P0C0A3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms