Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc4O35988 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.72■□□□□ 0.75
Sdc4O35988 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc4O35988 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.72■□□□□ 0.75
Sdc4O35988 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc4O35988 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sdc4O35988 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sdc4O35988 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sdc4O35988 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.7■□□□□ 0.74
Sdc4O35988 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.7■□□□□ 0.74
Sdc4O35988 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc4O35988 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc4O35988 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc4O35988 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.69■□□□□ 0.74
Sdc4O35988 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Sdc4O35988 Gm13534-201ENSMUST00000121169 513 ntBASIC19.69■□□□□ 0.74
Sdc4O35988 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.69■□□□□ 0.74
Sdc4O35988 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sdc4O35988 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
Sdc4O35988 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Sdc4O35988 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc4O35988 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc4O35988 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc4O35988 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sdc4O35988 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.68■□□□□ 0.74
Sdc4O35988 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.68■□□□□ 0.74
Sdc4O35988 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.68■□□□□ 0.74
Sdc4O35988 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Sdc4O35988 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Sdc4O35988 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Sdc4O35988 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Mir5133-201ENSMUST00000174955 77 ntBASIC19.67■□□□□ 0.74
Sdc4O35988 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.67■□□□□ 0.74
Sdc4O35988 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Sdc4O35988 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Sdc4O35988 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sdc4O35988 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.66■□□□□ 0.74
Sdc4O35988 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sdc4O35988 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Sdc4O35988 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Sdc4O35988 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.65■□□□□ 0.74
Sdc4O35988 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Sdc4O35988 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Sdc4O35988 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sdc4O35988 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Sdc4O35988 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc4O35988 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.64■□□□□ 0.73
Sdc4O35988 Gm6420-201ENSMUST00000193885 723 ntBASIC19.64■□□□□ 0.73
Sdc4O35988 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.64■□□□□ 0.73
Sdc4O35988 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc4O35988 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc4O35988 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Sdc4O35988 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.64■□□□□ 0.73
Sdc4O35988 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sdc4O35988 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.63■□□□□ 0.73
Sdc4O35988 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.63■□□□□ 0.73
Sdc4O35988 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Sdc4O35988 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Gm7290-201ENSMUST00000104990 617 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sdc4O35988 Gm12918-201ENSMUST00000120234 636 ntBASIC19.62■□□□□ 0.73
Sdc4O35988 Gm15710-201ENSMUST00000121821 636 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms