Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Gm8495-201ENSMUST00000188740 694 ntBASIC17.92■□□□□ 0.46
Cx3cl1O35188 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Gm5874-201ENSMUST00000096101 508 ntBASIC17.92■□□□□ 0.46
Cx3cl1O35188 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cx3cl1O35188 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cx3cl1O35188 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cx3cl1O35188 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cx3cl1O35188 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
Cx3cl1O35188 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.89■□□□□ 0.45
Cx3cl1O35188 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.89■□□□□ 0.45
Cx3cl1O35188 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.89■□□□□ 0.45
Cx3cl1O35188 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cx3cl1O35188 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Gm9988-201ENSMUST00000069786 435 ntBASIC17.88■□□□□ 0.45
Cx3cl1O35188 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cx3cl1O35188 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.87■□□□□ 0.45
Cx3cl1O35188 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.87■□□□□ 0.45
Cx3cl1O35188 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.87■□□□□ 0.45
Cx3cl1O35188 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.87■□□□□ 0.45
Cx3cl1O35188 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.86■□□□□ 0.45
Cx3cl1O35188 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Cx3cl1O35188 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cx3cl1O35188 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Cx3cl1O35188 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Cx3cl1O35188 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.84■□□□□ 0.45
Cx3cl1O35188 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cx3cl1O35188 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cx3cl1O35188 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Cx3cl1O35188 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cx3cl1O35188 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cx3cl1O35188 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms