Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Ubr4A2AN08 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Gm8097-201ENSMUST00000117903 829 ntBASIC10.28□□□□□ -0.76
Ubr4A2AN08 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Ubr4A2AN08 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Ubr4A2AN08 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Ubr4A2AN08 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC10.27□□□□□ -0.77
Ubr4A2AN08 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Gm6623-201ENSMUST00000173570 544 ntBASIC10.26□□□□□ -0.77
Ubr4A2AN08 Gm16042-201ENSMUST00000204813 1247 ntBASIC10.26□□□□□ -0.77
Ubr4A2AN08 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
Ubr4A2AN08 Gm13158-201ENSMUST00000122007 736 ntBASIC10.26□□□□□ -0.77
Ubr4A2AN08 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Gm27525-201ENSMUST00000184465 107 ntBASIC10.25□□□□□ -0.77
Ubr4A2AN08 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Ubr4A2AN08 AC131586.2-201ENSMUST00000228370 1512 ntBASIC10.25□□□□□ -0.77
Ubr4A2AN08 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC10.25□□□□□ -0.77
Ubr4A2AN08 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC10.25□□□□□ -0.77
Ubr4A2AN08 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Gm18115-201ENSMUST00000221209 621 ntBASIC10.24□□□□□ -0.77
Ubr4A2AN08 AC155729.1-201ENSMUST00000227758 544 ntBASIC10.24□□□□□ -0.77
Ubr4A2AN08 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Ubr4A2AN08 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC10.24□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms