Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Gm43006-201ENSMUST00000197702 1602 ntBASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.28■□□□□ 0.2
Col13a1Q9R1N9 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col13a1Q9R1N9 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col13a1Q9R1N9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Gm44878-201ENSMUST00000205812 1295 ntBASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col13a1Q9R1N9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gm7290-201ENSMUST00000104990 617 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gm12918-201ENSMUST00000120234 636 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gm15710-201ENSMUST00000121821 636 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gm5075-201ENSMUST00000196916 622 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Trmt13-210ENSMUST00000198454 880 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col13a1Q9R1N9 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Gm5913-201ENSMUST00000119397 1399 ntBASIC16.24■□□□□ 0.19
Col13a1Q9R1N9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
Col13a1Q9R1N9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col13a1Q9R1N9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col13a1Q9R1N9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col13a1Q9R1N9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms