Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps35Q9EQH3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps35Q9EQH3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps35Q9EQH3 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vps35Q9EQH3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vps35Q9EQH3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Vps35Q9EQH3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Gm27801-201ENSMUST00000184174 223 ntBASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps35Q9EQH3 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps35Q9EQH3 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps35Q9EQH3 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.11■□□□□ 0.65
Vps35Q9EQH3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.1■□□□□ 0.65
Vps35Q9EQH3 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Vps35Q9EQH3 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms