Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdc40Q9DC48 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdc40Q9DC48 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cdc40Q9DC48 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Gm26571-201ENSMUST00000181399 666 ntBASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Gm7291-201ENSMUST00000199147 382 ntBASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Gm18671-201ENSMUST00000214826 683 ntBASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Cdc40Q9DC48 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Gm42778-201ENSMUST00000199644 553 ntBASIC17.77■□□□□ 0.44
Cdc40Q9DC48 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Cdc40Q9DC48 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
Cdc40Q9DC48 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Cdc40Q9DC48 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Cdc40Q9DC48 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Cdc40Q9DC48 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Cdc40Q9DC48 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Cdc40Q9DC48 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Iqck-206ENSMUST00000208658 2891 ntBASIC17.73■□□□□ 0.43
Cdc40Q9DC48 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 AA386476-201ENSMUST00000098781 1665 ntBASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Gm27405-201ENSMUST00000184201 112 ntBASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Cdc40Q9DC48 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.71■□□□□ 0.43
Cdc40Q9DC48 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Cdc40Q9DC48 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms