Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.23■□□□□ 0.99
Rpap3Q9D706 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rpap3Q9D706 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Rpap3Q9D706 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gm7290-201ENSMUST00000104990 617 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gm12918-201ENSMUST00000120234 636 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gm15710-201ENSMUST00000121821 636 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Nespas-201ENSMUST00000143738 1083 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gm5075-201ENSMUST00000196916 622 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC21.22■□□□□ 0.99
Rpap3Q9D706 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rpap3Q9D706 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rpap3Q9D706 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rpap3Q9D706 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rpap3Q9D706 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rpap3Q9D706 Hsf1-207ENSMUST00000228371 2102 ntBASIC21.19■□□□□ 0.98
Rpap3Q9D706 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Gm6365-201ENSMUST00000054711 744 ntBASIC21.19■□□□□ 0.98
Rpap3Q9D706 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rpap3Q9D706 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Rpap3Q9D706 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC21.17■□□□□ 0.98
Rpap3Q9D706 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.17■□□□□ 0.98
Rpap3Q9D706 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rpap3Q9D706 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Rpap3Q9D706 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rpap3Q9D706 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rpap3Q9D706 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rpap3Q9D706 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Rpap3Q9D706 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.15■□□□□ 0.98
Rpap3Q9D706 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms