Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 Gm40848-201ENSMUST00000221998 324 ntBASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.16■□□□□ 0.82
Ddx56Q9D0R4 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Gm27801-201ENSMUST00000184174 223 ntBASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Iqck-206ENSMUST00000208658 2891 ntBASIC20.15■□□□□ 0.82
Ddx56Q9D0R4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Ddx56Q9D0R4 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx56Q9D0R4 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.13■□□□□ 0.81
Ddx56Q9D0R4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx56Q9D0R4 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx56Q9D0R4 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx56Q9D0R4 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms