Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rnf111Q99ML9 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rnf111Q99ML9 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rnf111Q99ML9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rnf111Q99ML9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rnf111Q99ML9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rnf111Q99ML9 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 BC021767-201ENSMUST00000126387 1716 ntBASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rnf111Q99ML9 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Rnf111Q99ML9 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.55■□□□□ 0.56
Rnf111Q99ML9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rnf111Q99ML9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rnf111Q99ML9 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Gm43137-201ENSMUST00000198052 594 ntBASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rnf111Q99ML9 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Rnf111Q99ML9 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms