Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Brf1Q8CFK2 Gm37352-201ENSMUST00000193908 2181 ntBASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Brf1Q8CFK2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Brf1Q8CFK2 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Brf1Q8CFK2 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Brf1Q8CFK2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Brf1Q8CFK2 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Brf1Q8CFK2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Brf1Q8CFK2 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Brf1Q8CFK2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Brf1Q8CFK2 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Gm14281-201ENSMUST00000121700 1294 ntBASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Brf1Q8CFK2 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Brf1Q8CFK2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Brf1Q8CFK2 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Brf1Q8CFK2 Iqck-206ENSMUST00000208658 2891 ntBASIC23.13■■□□□ 1.29
Brf1Q8CFK2 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Brf1Q8CFK2 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Brf1Q8CFK2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Brf1Q8CFK2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms