Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
Usp47Q8BY87 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Usp47Q8BY87 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC27.33■■□□□ 1.97
Usp47Q8BY87 Gm10655-201ENSMUST00000098658 1397 ntBASIC27.33■■□□□ 1.96
Usp47Q8BY87 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Usp47Q8BY87 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Usp47Q8BY87 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
Usp47Q8BY87 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Usp47Q8BY87 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Usp47Q8BY87 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Usp47Q8BY87 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC27.3■■□□□ 1.96
Usp47Q8BY87 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Usp47Q8BY87 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
Usp47Q8BY87 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC27.29■■□□□ 1.96
Usp47Q8BY87 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
Usp47Q8BY87 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp47Q8BY87 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Usp47Q8BY87 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Usp47Q8BY87 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
Usp47Q8BY87 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Usp47Q8BY87 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
Usp47Q8BY87 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Usp47Q8BY87 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
Usp47Q8BY87 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Gm6420-201ENSMUST00000193885 723 ntBASIC27.27■■□□□ 1.96
Usp47Q8BY87 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Usp47Q8BY87 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
Usp47Q8BY87 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC27.26■■□□□ 1.96
Usp47Q8BY87 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
Usp47Q8BY87 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
Usp47Q8BY87 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC27.26■■□□□ 1.95
Usp47Q8BY87 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Gm42555-201ENSMUST00000199304 1039 ntBASIC27.26■■□□□ 1.95
Usp47Q8BY87 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Usp47Q8BY87 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Nespas-201ENSMUST00000143738 1083 ntBASIC27.25■■□□□ 1.95
Usp47Q8BY87 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
Usp47Q8BY87 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Usp47Q8BY87 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC27.24■■□□□ 1.95
Usp47Q8BY87 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Usp47Q8BY87 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
Usp47Q8BY87 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Usp47Q8BY87 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Usp47Q8BY87 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC27.24■■□□□ 1.95
Usp47Q8BY87 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
Usp47Q8BY87 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Usp47Q8BY87 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC27.22■■□□□ 1.95
Usp47Q8BY87 Gm12933-201ENSMUST00000120203 872 ntBASIC27.22■■□□□ 1.95
Usp47Q8BY87 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
Usp47Q8BY87 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Usp47Q8BY87 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
Usp47Q8BY87 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
Usp47Q8BY87 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
Usp47Q8BY87 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC27.22■■□□□ 1.95
Usp47Q8BY87 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Usp47Q8BY87 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms