Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gm10602-201ENSMUST00000098239 609 ntBASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Hmgb4Q6P8W9 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Hmgb4Q6P8W9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Hmgb4Q6P8W9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Hmgb4Q6P8W9 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Hmgb4Q6P8W9 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Hmgb4Q6P8W9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Hmgb4Q6P8W9 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb4Q6P8W9 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Gm27011-201ENSMUST00000182352 972 ntBASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb4Q6P8W9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb4Q6P8W9 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Hmgb4Q6P8W9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Gm7514-201ENSMUST00000209475 934 ntBASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb4Q6P8W9 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb4Q6P8W9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Hmgb4Q6P8W9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Hmgb4Q6P8W9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Hmgb4Q6P8W9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Hmgb4Q6P8W9 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb4Q6P8W9 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hmgb4Q6P8W9 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms