Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Col7a1Q63870 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.28■□□□□ 0.2
Col7a1Q63870 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col7a1Q63870 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.28■□□□□ 0.2
Col7a1Q63870 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.28■□□□□ 0.2
Col7a1Q63870 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col7a1Q63870 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC16.27■□□□□ 0.2
Col7a1Q63870 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col7a1Q63870 Gm7889-201ENSMUST00000185591 958 ntBASIC16.27■□□□□ 0.2
Col7a1Q63870 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col7a1Q63870 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.27■□□□□ 0.2
Col7a1Q63870 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col7a1Q63870 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col7a1Q63870 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.27■□□□□ 0.19
Col7a1Q63870 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Col7a1Q63870 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.26■□□□□ 0.19
Col7a1Q63870 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC16.26■□□□□ 0.19
Col7a1Q63870 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col7a1Q63870 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Col7a1Q63870 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.25■□□□□ 0.19
Col7a1Q63870 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC16.25■□□□□ 0.19
Col7a1Q63870 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.25■□□□□ 0.19
Col7a1Q63870 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.25■□□□□ 0.19
Col7a1Q63870 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC16.25■□□□□ 0.19
Col7a1Q63870 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Col7a1Q63870 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col7a1Q63870 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.24■□□□□ 0.19
Col7a1Q63870 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Gm21814-202ENSMUST00000203277 873 ntBASIC16.24■□□□□ 0.19
Col7a1Q63870 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col7a1Q63870 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.23■□□□□ 0.19
Col7a1Q63870 Gm30025-201ENSMUST00000218555 728 ntBASIC16.23■□□□□ 0.19
Col7a1Q63870 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.23■□□□□ 0.19
Col7a1Q63870 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col7a1Q63870 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Col7a1Q63870 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Col7a1Q63870 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Col7a1Q63870 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Col7a1Q63870 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col7a1Q63870 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col7a1Q63870 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col7a1Q63870 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
Col7a1Q63870 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col7a1Q63870 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
Col7a1Q63870 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col7a1Q63870 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col7a1Q63870 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col7a1Q63870 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.21■□□□□ 0.18
Col7a1Q63870 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col7a1Q63870 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col7a1Q63870 AA414768-201ENSMUST00000121924 1257 ntBASIC16.2■□□□□ 0.18
Col7a1Q63870 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.2■□□□□ 0.18
Col7a1Q63870 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms