Protein–RNA interactions for Protein: Q5M6W3

Clhc1, Clathrin heavy chain linker domain-containing protein 1, mousemouse

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clhc1Q5M6W3 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Clhc1Q5M6W3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Clhc1Q5M6W3 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 Gm7143-201ENSMUST00000222811 859 ntBASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.45■□□□□ 0.54
Clhc1Q5M6W3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 BC021767-201ENSMUST00000126387 1716 ntBASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clhc1Q5M6W3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.43■□□□□ 0.54
Clhc1Q5M6W3 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.42■□□□□ 0.54
Clhc1Q5M6W3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Gm9870-201ENSMUST00000063874 645 ntBASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Clhc1Q5M6W3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clhc1Q5M6W3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms