Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.32■□□□□ 0.84
Upf3aQ3ULJ3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Gm13168-201ENSMUST00000121771 632 ntBASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3aQ3ULJ3 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Upf3aQ3ULJ3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.29■□□□□ 0.84
Upf3aQ3ULJ3 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Gm10252-201ENSMUST00000209541 832 ntBASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3aQ3ULJ3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Rab3c-203ENSMUST00000224180 967 ntBASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Upf3aQ3ULJ3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Upf3aQ3ULJ3 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Upf3aQ3ULJ3 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3aQ3ULJ3 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Trmt13-210ENSMUST00000198454 880 ntBASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3aQ3ULJ3 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms