Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.33■□□□□ 0.52
Sox3P53784 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sox3P53784 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.33■□□□□ 0.52
Sox3P53784 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.33■□□□□ 0.52
Sox3P53784 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox3P53784 Gm4968-201ENSMUST00000071458 858 ntBASIC18.33■□□□□ 0.52
Sox3P53784 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
Sox3P53784 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.32■□□□□ 0.52
Sox3P53784 Gm8520-201ENSMUST00000186517 868 ntBASIC18.32■□□□□ 0.52
Sox3P53784 Gm7977-201ENSMUST00000193787 748 ntBASIC18.32■□□□□ 0.52
Sox3P53784 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Sox3P53784 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox3P53784 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
Sox3P53784 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 Gm11421-201ENSMUST00000122124 294 ntBASIC18.31■□□□□ 0.52
Sox3P53784 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sox3P53784 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.31■□□□□ 0.52
Sox3P53784 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox3P53784 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.3■□□□□ 0.52
Sox3P53784 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
Sox3P53784 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.3■□□□□ 0.52
Sox3P53784 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.3■□□□□ 0.52
Sox3P53784 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox3P53784 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Sox3P53784 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.29■□□□□ 0.52
Sox3P53784 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Sox3P53784 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.29■□□□□ 0.52
Sox3P53784 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox3P53784 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.28■□□□□ 0.52
Sox3P53784 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Sox3P53784 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox3P53784 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.28■□□□□ 0.52
Sox3P53784 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Sox3P53784 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Sox3P53784 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.27■□□□□ 0.52
Sox3P53784 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Gm12527-201ENSMUST00000117967 564 ntBASIC18.27■□□□□ 0.52
Sox3P53784 Gm13234-201ENSMUST00000120010 747 ntBASIC18.27■□□□□ 0.52
Sox3P53784 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Sox3P53784 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.27■□□□□ 0.52
Sox3P53784 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Gm9988-201ENSMUST00000069786 435 ntBASIC18.27■□□□□ 0.52
Sox3P53784 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox3P53784 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.27■□□□□ 0.51
Sox3P53784 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sox3P53784 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sox3P53784 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sox3P53784 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.26■□□□□ 0.51
Sox3P53784 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Sox3P53784 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Sox3P53784 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.26■□□□□ 0.51
Sox3P53784 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Sox3P53784 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.25■□□□□ 0.51
Sox3P53784 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms