Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cdx2P43241 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cdx2P43241 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx2P43241 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Cdx2P43241 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Cdx2P43241 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Cdx2P43241 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Cdx2P43241 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.34■□□□□ 0.53
Cdx2P43241 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.34■□□□□ 0.53
Cdx2P43241 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cdx2P43241 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cdx2P43241 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cdx2P43241 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Cdx2P43241 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Cdx2P43241 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx2P43241 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.33■□□□□ 0.52
Cdx2P43241 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.33■□□□□ 0.52
Cdx2P43241 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cdx2P43241 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx2P43241 Gm27032-201ENSMUST00000183124 1116 ntBASIC18.33■□□□□ 0.52
Cdx2P43241 Mir6982-201ENSMUST00000184354 68 ntBASIC18.33■□□□□ 0.52
Cdx2P43241 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx2P43241 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cdx2P43241 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.33■□□□□ 0.52
Cdx2P43241 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Cdx2P43241 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Cdx2P43241 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Gm27275-201ENSMUST00000184318 272 ntBASIC18.32■□□□□ 0.52
Cdx2P43241 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Cdx2P43241 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.32■□□□□ 0.52
Cdx2P43241 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cdx2P43241 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cdx2P43241 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Cdx2P43241 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.31■□□□□ 0.52
Cdx2P43241 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.31■□□□□ 0.52
Cdx2P43241 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Cdx2P43241 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cdx2P43241 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cdx2P43241 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Gm12896-201ENSMUST00000118430 226 ntBASIC18.3■□□□□ 0.52
Cdx2P43241 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.3■□□□□ 0.52
Cdx2P43241 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Cdx2P43241 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cdx2P43241 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Cdx2P43241 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.29■□□□□ 0.52
Cdx2P43241 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx2P43241 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx2P43241 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.29■□□□□ 0.52
Cdx2P43241 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Cdx2P43241 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx2P43241 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Cdx2P43241 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cdx2P43241 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cdx2P43241 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx2P43241 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx2P43241 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx2P43241 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.28■□□□□ 0.52
Cdx2P43241 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.28■□□□□ 0.52
Cdx2P43241 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.28■□□□□ 0.52
Cdx2P43241 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.28■□□□□ 0.52
Cdx2P43241 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Cdx2P43241 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.28■□□□□ 0.52
Cdx2P43241 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cdx2P43241 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
Cdx2P43241 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.27■□□□□ 0.52
Cdx2P43241 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms