Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Chmp6P0C0A3 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.83■□□□□ 0.93
Chmp6P0C0A3 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Chmp6P0C0A3 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.83■□□□□ 0.93
Chmp6P0C0A3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Chmp6P0C0A3 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Chmp6P0C0A3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Chmp6P0C0A3 AA386476-201ENSMUST00000098781 1665 ntBASIC20.83■□□□□ 0.92
Chmp6P0C0A3 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Chmp6P0C0A3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Chmp6P0C0A3 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chmp6P0C0A3 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Chmp6P0C0A3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chmp6P0C0A3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Chmp6P0C0A3 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Chmp6P0C0A3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chmp6P0C0A3 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.81■□□□□ 0.92
Chmp6P0C0A3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Chmp6P0C0A3 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20.79■□□□□ 0.92
Chmp6P0C0A3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chmp6P0C0A3 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chmp6P0C0A3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.77■□□□□ 0.92
Chmp6P0C0A3 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Chmp6P0C0A3 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Chmp6P0C0A3 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Chmp6P0C0A3 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms