Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 AA386476-201ENSMUST00000098781 1665 ntBASIC17.57■□□□□ 0.4
Col5a1O88207 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.56■□□□□ 0.4
Col5a1O88207 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col5a1O88207 Gm6420-201ENSMUST00000193885 723 ntBASIC17.56■□□□□ 0.4
Col5a1O88207 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col5a1O88207 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.56■□□□□ 0.4
Col5a1O88207 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Col5a1O88207 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.55■□□□□ 0.4
Col5a1O88207 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col5a1O88207 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Col5a1O88207 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Col5a1O88207 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col5a1O88207 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col5a1O88207 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col5a1O88207 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Col5a1O88207 Gm715-201ENSMUST00000117865 831 ntBASIC17.54■□□□□ 0.4
Col5a1O88207 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col5a1O88207 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col5a1O88207 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col5a1O88207 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.53■□□□□ 0.4
Col5a1O88207 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col5a1O88207 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col5a1O88207 Gm15565-201ENSMUST00000118890 427 ntBASIC17.52■□□□□ 0.4
Col5a1O88207 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Col5a1O88207 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col5a1O88207 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col5a1O88207 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.52■□□□□ 0.4
Col5a1O88207 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Col5a1O88207 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col5a1O88207 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Col5a1O88207 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col5a1O88207 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.51■□□□□ 0.39
Col5a1O88207 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col5a1O88207 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.51■□□□□ 0.39
Col5a1O88207 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col5a1O88207 Gm7860-201ENSMUST00000121190 879 ntBASIC17.51■□□□□ 0.39
Col5a1O88207 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.51■□□□□ 0.39
Col5a1O88207 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col5a1O88207 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.5■□□□□ 0.39
Col5a1O88207 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.5■□□□□ 0.39
Col5a1O88207 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col5a1O88207 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col5a1O88207 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col5a1O88207 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col5a1O88207 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col5a1O88207 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col5a1O88207 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms