Protein–RNA interactions for Protein: O35600

Abca4, Retinal-specific ATP-binding cassette transporter, mousemouse

Predictions only

Length 2,310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Abca4O35600 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.28■□□□□ 0.52
Abca4O35600 Gm11539-201ENSMUST00000119837 557 ntBASIC18.28■□□□□ 0.52
Abca4O35600 Gm13436-201ENSMUST00000120418 567 ntBASIC18.28■□□□□ 0.52
Abca4O35600 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC18.28■□□□□ 0.52
Abca4O35600 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Abca4O35600 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Abca4O35600 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Abca4O35600 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Abca4O35600 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Abca4O35600 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Abca4O35600 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Abca4O35600 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Abca4O35600 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Abca4O35600 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Abca4O35600 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Abca4O35600 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Abca4O35600 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Abca4O35600 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Abca4O35600 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.26■□□□□ 0.51
Abca4O35600 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.25■□□□□ 0.51
Abca4O35600 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Abca4O35600 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Abca4O35600 Gm10013-201ENSMUST00000106074 672 ntBASIC18.24■□□□□ 0.51
Abca4O35600 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.24■□□□□ 0.51
Abca4O35600 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.24■□□□□ 0.51
Abca4O35600 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.24■□□□□ 0.51
Abca4O35600 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Abca4O35600 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Abca4O35600 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.23■□□□□ 0.51
Abca4O35600 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Abca4O35600 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.23■□□□□ 0.51
Abca4O35600 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.23■□□□□ 0.51
Abca4O35600 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.23■□□□□ 0.51
Abca4O35600 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Abca4O35600 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.22■□□□□ 0.51
Abca4O35600 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.22■□□□□ 0.51
Abca4O35600 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Abca4O35600 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Abca4O35600 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Abca4O35600 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Abca4O35600 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Abca4O35600 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Abca4O35600 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.21■□□□□ 0.51
Abca4O35600 Gm33142-201ENSMUST00000193913 867 ntBASIC18.21■□□□□ 0.51
Abca4O35600 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.21■□□□□ 0.51
Abca4O35600 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Abca4O35600 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.5
Abca4O35600 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Abca4O35600 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Abca4O35600 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Abca4O35600 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Abca4O35600 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Abca4O35600 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Abca4O35600 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.19■□□□□ 0.5
Abca4O35600 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Abca4O35600 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Abca4O35600 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Abca4O35600 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Abca4O35600 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Abca4O35600 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Abca4O35600 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Abca4O35600 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms