Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Hfm1D3Z4R1 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 Gm18666-201ENSMUST00000190039 958 ntBASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC27.35■■□□□ 1.97
Hfm1D3Z4R1 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Hfm1D3Z4R1 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Gm37055-201ENSMUST00000191866 133 ntBASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Gm44549-201ENSMUST00000208351 577 ntBASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Hfm1D3Z4R1 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.96
Hfm1D3Z4R1 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC27.33■■□□□ 1.96
Hfm1D3Z4R1 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.96
Hfm1D3Z4R1 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Hfm1D3Z4R1 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 Gm11643-201ENSMUST00000119578 864 ntBASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
Hfm1D3Z4R1 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Hfm1D3Z4R1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Hfm1D3Z4R1 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Gm26971-201ENSMUST00000182423 1072 ntBASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Gm37035-201ENSMUST00000194809 2148 ntBASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Hfm1D3Z4R1 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Nrn1-203ENSMUST00000223611 1443 ntBASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Hfm1D3Z4R1 Mir1199-201ENSMUST00000117015 119 ntBASIC27.26■■□□□ 1.95
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms