Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prpf40aQ9R1C7 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.16■□□□□ 0.98
Prpf40aQ9R1C7 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prpf40aQ9R1C7 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.16■□□□□ 0.98
Prpf40aQ9R1C7 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prpf40aQ9R1C7 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Prpf40aQ9R1C7 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Prpf40aQ9R1C7 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Prpf40aQ9R1C7 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.15■□□□□ 0.98
Prpf40aQ9R1C7 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Prpf40aQ9R1C7 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Prpf40aQ9R1C7 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prpf40aQ9R1C7 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Prpf40aQ9R1C7 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Prpf40aQ9R1C7 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Smad6-203ENSMUST00000179458 273 ntBASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.11■□□□□ 0.97
Prpf40aQ9R1C7 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Gm43017-201ENSMUST00000198296 752 ntBASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC21.1■□□□□ 0.97
Prpf40aQ9R1C7 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 AA386476-201ENSMUST00000098781 1665 ntBASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.09■□□□□ 0.97
Prpf40aQ9R1C7 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Prpf40aQ9R1C7 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Prpf40aQ9R1C7 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Prpf40aQ9R1C7 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Prpf40aQ9R1C7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Prpf40aQ9R1C7 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms