Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx56Q9D0R4 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx56Q9D0R4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.23■□□□□ 0.83
Ddx56Q9D0R4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Gm43017-201ENSMUST00000198296 752 ntBASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx56Q9D0R4 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 Gm26833-201ENSMUST00000180899 440 ntBASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
Ddx56Q9D0R4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ddx56Q9D0R4 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ddx56Q9D0R4 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ddx56Q9D0R4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ddx56Q9D0R4 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms