Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Ccdc28aQ8CEI3 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ccdc28aQ8CEI3 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Ccdc28aQ8CEI3 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28aQ8CEI3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28aQ8CEI3 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28aQ8CEI3 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Ccdc28aQ8CEI3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ccdc28aQ8CEI3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ccdc28aQ8CEI3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Ccdc28aQ8CEI3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ccdc28aQ8CEI3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ccdc28aQ8CEI3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.27■□□□□ 0.84
Ccdc28aQ8CEI3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ccdc28aQ8CEI3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc28aQ8CEI3 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms