Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Npc1l1Q6T3U4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.24■■□□□ 1.31
Npc1l1Q6T3U4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Npc1l1Q6T3U4 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Npc1l1Q6T3U4 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Npc1l1Q6T3U4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Ap3s1-204ENSMUST00000225520 957 ntBASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Npc1l1Q6T3U4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Npc1l1Q6T3U4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Npc1l1Q6T3U4 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Npc1l1Q6T3U4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Npc1l1Q6T3U4 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Npc1l1Q6T3U4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Npc1l1Q6T3U4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Npc1l1Q6T3U4 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Npc1l1Q6T3U4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Gm13146-201ENSMUST00000118508 780 ntBASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
Npc1l1Q6T3U4 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Gm7514-201ENSMUST00000209475 934 ntBASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Npc1l1Q6T3U4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Npc1l1Q6T3U4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Npc1l1Q6T3U4 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
Npc1l1Q6T3U4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Npc1l1Q6T3U4 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Npc1l1Q6T3U4 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
Npc1l1Q6T3U4 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Npc1l1Q6T3U4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Npc1l1Q6T3U4 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms