Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Gm5408-201ENSMUST00000197998 747 ntBASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Shkbp1Q6P7W2 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Gm12527-201ENSMUST00000117967 564 ntBASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Gm6211-202ENSMUST00000167849 925 ntBASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shkbp1Q6P7W2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shkbp1Q6P7W2 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.17■□□□□ 0.82
Shkbp1Q6P7W2 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
Shkbp1Q6P7W2 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Shkbp1Q6P7W2 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Shkbp1Q6P7W2 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Shkbp1Q6P7W2 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shkbp1Q6P7W2 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shkbp1Q6P7W2 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Shkbp1Q6P7W2 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Shkbp1Q6P7W2 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms