Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Six1Q62231 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Six1Q62231 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Six1Q62231 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Six1Q62231 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Six1Q62231 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.84■□□□□ 0.77
Six1Q62231 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Six1Q62231 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Six1Q62231 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Six1Q62231 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.84■□□□□ 0.77
Six1Q62231 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Six1Q62231 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Six1Q62231 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Six1Q62231 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Six1Q62231 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.83■□□□□ 0.77
Six1Q62231 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Six1Q62231 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Six1Q62231 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Six1Q62231 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Six1Q62231 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.82■□□□□ 0.76
Six1Q62231 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.82■□□□□ 0.76
Six1Q62231 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.82■□□□□ 0.76
Six1Q62231 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Six1Q62231 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
Six1Q62231 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Six1Q62231 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Six1Q62231 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Six1Q62231 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Six1Q62231 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Six1Q62231 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Six1Q62231 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Six1Q62231 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Six1Q62231 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Six1Q62231 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.79■□□□□ 0.76
Six1Q62231 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.79■□□□□ 0.76
Six1Q62231 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Six1Q62231 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Six1Q62231 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Six1Q62231 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Six1Q62231 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Six1Q62231 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Six1Q62231 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Six1Q62231 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
Six1Q62231 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Six1Q62231 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.76■□□□□ 0.75
Six1Q62231 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Six1Q62231 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Six1Q62231 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Six1Q62231 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Six1Q62231 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Six1Q62231 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Six1Q62231 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Six1Q62231 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms