Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Six4Q61321 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Six4Q61321 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Six4Q61321 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Six4Q61321 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.53■□□□□ 0.72
Six4Q61321 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Six4Q61321 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Six4Q61321 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Six4Q61321 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Six4Q61321 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Six4Q61321 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Six4Q61321 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Six4Q61321 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
Six4Q61321 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
Six4Q61321 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Six4Q61321 Gm15039-201ENSMUST00000118914 875 ntBASIC19.52■□□□□ 0.72
Six4Q61321 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Six4Q61321 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
Six4Q61321 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Six4Q61321 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Six4Q61321 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.51■□□□□ 0.71
Six4Q61321 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Six4Q61321 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Six4Q61321 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Six4Q61321 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Six4Q61321 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.5■□□□□ 0.71
Six4Q61321 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.5■□□□□ 0.71
Six4Q61321 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.5■□□□□ 0.71
Six4Q61321 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.5■□□□□ 0.71
Six4Q61321 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Six4Q61321 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Six4Q61321 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.5■□□□□ 0.71
Six4Q61321 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Six4Q61321 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Six4Q61321 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.49■□□□□ 0.71
Six4Q61321 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Six4Q61321 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Six4Q61321 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Six4Q61321 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Six4Q61321 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.48■□□□□ 0.71
Six4Q61321 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.48■□□□□ 0.71
Six4Q61321 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.48■□□□□ 0.71
Six4Q61321 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.48■□□□□ 0.71
Six4Q61321 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.48■□□□□ 0.71
Six4Q61321 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Six4Q61321 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.47■□□□□ 0.71
Six4Q61321 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.47■□□□□ 0.71
Six4Q61321 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Six4Q61321 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
Six4Q61321 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Six4Q61321 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Six4Q61321 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.46■□□□□ 0.71
Six4Q61321 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.46■□□□□ 0.71
Six4Q61321 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.46■□□□□ 0.71
Six4Q61321 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Six4Q61321 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Six4Q61321 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Six4Q61321 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms