Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cln3Q61124 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cln3Q61124 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cln3Q61124 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Cln3Q61124 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.33■■□□□ 1.01
Cln3Q61124 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cln3Q61124 Gm26524-201ENSMUST00000192339 390 ntBASIC21.33■■□□□ 1.01
Cln3Q61124 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21.33■■□□□ 1.01
Cln3Q61124 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.33■■□□□ 1.01
Cln3Q61124 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cln3Q61124 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cln3Q61124 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cln3Q61124 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.32■■□□□ 1
Cln3Q61124 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.32■■□□□ 1
Cln3Q61124 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.32■■□□□ 1
Cln3Q61124 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC21.32■■□□□ 1
Cln3Q61124 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.32■■□□□ 1
Cln3Q61124 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cln3Q61124 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cln3Q61124 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.32■■□□□ 1
Cln3Q61124 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
Cln3Q61124 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cln3Q61124 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cln3Q61124 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cln3Q61124 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.32■■□□□ 1
Cln3Q61124 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cln3Q61124 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.31■■□□□ 1
Cln3Q61124 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cln3Q61124 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cln3Q61124 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Cln3Q61124 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cln3Q61124 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.31■■□□□ 1
Cln3Q61124 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.31■■□□□ 1
Cln3Q61124 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cln3Q61124 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.3■■□□□ 1
Cln3Q61124 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cln3Q61124 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cln3Q61124 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.29■■□□□ 1
Cln3Q61124 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.29■■□□□ 1
Cln3Q61124 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
Cln3Q61124 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.29■■□□□ 1
Cln3Q61124 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cln3Q61124 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Cln3Q61124 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.29■■□□□ 1
Cln3Q61124 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cln3Q61124 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Cln3Q61124 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Cln3Q61124 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.28■■□□□ 1
Cln3Q61124 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.28■■□□□ 1
Cln3Q61124 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Cln3Q61124 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.28■■□□□ 1
Cln3Q61124 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cln3Q61124 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.27■■□□□ 1
Cln3Q61124 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.27■■□□□ 1
Cln3Q61124 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cln3Q61124 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Cln3Q61124 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Cln3Q61124 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.26■□□□□ 0.99
Cln3Q61124 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
Cln3Q61124 Trmt13-210ENSMUST00000198454 880 ntBASIC21.26■□□□□ 0.99
Cln3Q61124 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.26■□□□□ 0.99
Cln3Q61124 Rab3c-203ENSMUST00000224180 967 ntBASIC21.26■□□□□ 0.99
Cln3Q61124 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms