Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3bQ3ULL6 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.64■□□□□ 0.89
Upf3bQ3ULL6 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
Upf3bQ3ULL6 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.64■□□□□ 0.89
Upf3bQ3ULL6 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Upf3bQ3ULL6 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Upf3bQ3ULL6 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Gm27801-201ENSMUST00000184174 223 ntBASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Upf3bQ3ULL6 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Upf3bQ3ULL6 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Upf3bQ3ULL6 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Gm15039-201ENSMUST00000118914 875 ntBASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf3bQ3ULL6 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3bQ3ULL6 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3bQ3ULL6 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.58■□□□□ 0.89
Upf3bQ3ULL6 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3bQ3ULL6 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3bQ3ULL6 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.58■□□□□ 0.88
Upf3bQ3ULL6 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3bQ3ULL6 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Upf3bQ3ULL6 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3bQ3ULL6 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms