Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx3-1P97436 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Nkx3-1P97436 AC154266.1-201ENSMUST00000223190 503 ntBASIC16.69■□□□□ 0.26
Nkx3-1P97436 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Nkx3-1P97436 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx3-1P97436 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC16.69■□□□□ 0.26
Nkx3-1P97436 AA386476-201ENSMUST00000098781 1665 ntBASIC16.69■□□□□ 0.26
Nkx3-1P97436 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nkx3-1P97436 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.68■□□□□ 0.26
Nkx3-1P97436 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.68■□□□□ 0.26
Nkx3-1P97436 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nkx3-1P97436 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Cdkn3-203ENSMUST00000227149 1952 ntBASIC16.67■□□□□ 0.26
Nkx3-1P97436 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
Nkx3-1P97436 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.66■□□□□ 0.26
Nkx3-1P97436 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Nkx3-1P97436 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Notumos-201ENSMUST00000151998 2659 ntBASIC16.65■□□□□ 0.26
Nkx3-1P97436 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Gm6365-201ENSMUST00000054711 744 ntBASIC16.65■□□□□ 0.26
Nkx3-1P97436 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Gm4968-201ENSMUST00000071458 858 ntBASIC16.65■□□□□ 0.26
Nkx3-1P97436 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Nkx3-1P97436 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Nkx3-1P97436 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Gm6420-201ENSMUST00000193885 723 ntBASIC16.64■□□□□ 0.25
Nkx3-1P97436 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Nkx3-1P97436 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Nkx3-1P97436 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.63■□□□□ 0.25
Nkx3-1P97436 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nkx3-1P97436 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Nkx3-1P97436 Gm7290-201ENSMUST00000104990 617 ntBASIC16.62■□□□□ 0.25
Nkx3-1P97436 Gm12918-201ENSMUST00000120234 636 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms