Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shox2P70390 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Gm14523-201ENSMUST00000117260 558 ntBASIC19.15■□□□□ 0.66
Shox2P70390 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.15■□□□□ 0.66
Shox2P70390 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shox2P70390 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.15■□□□□ 0.66
Shox2P70390 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Shox2P70390 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Shox2P70390 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Shox2P70390 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Shox2P70390 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Shox2P70390 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Shox2P70390 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Shox2P70390 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Shox2P70390 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Shox2P70390 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.13■□□□□ 0.65
Shox2P70390 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
Shox2P70390 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shox2P70390 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Shox2P70390 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Shox2P70390 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.12■□□□□ 0.65
Shox2P70390 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shox2P70390 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 AA386476-201ENSMUST00000098781 1665 ntBASIC19.11■□□□□ 0.65
Shox2P70390 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.11■□□□□ 0.65
Shox2P70390 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.11■□□□□ 0.65
Shox2P70390 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shox2P70390 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.1■□□□□ 0.65
Shox2P70390 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.1■□□□□ 0.65
Shox2P70390 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Shox2P70390 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Shox2P70390 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Shox2P70390 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shox2P70390 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Shox2P70390 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shox2P70390 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Shox2P70390 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Shox2P70390 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Shox2P70390 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.08■□□□□ 0.65
Shox2P70390 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Shox2P70390 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Shox2P70390 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Shox2P70390 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Shox2P70390 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Gm27502-201ENSMUST00000183495 199 ntBASIC19.08■□□□□ 0.64
Shox2P70390 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Shox2P70390 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Fst-202ENSMUST00000223640 2612 ntBASIC19.08■□□□□ 0.64
Shox2P70390 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Shox2P70390 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Shox2P70390 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.07■□□□□ 0.64
Shox2P70390 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.07■□□□□ 0.64
Shox2P70390 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shox2P70390 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.07■□□□□ 0.64
Shox2P70390 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms