Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.41■□□□□ 0.54
Sox3P53784 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Sox3P53784 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.4■□□□□ 0.54
Sox3P53784 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.4■□□□□ 0.54
Sox3P53784 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.4■□□□□ 0.54
Sox3P53784 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sox3P53784 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Sox3P53784 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.39■□□□□ 0.54
Sox3P53784 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Sox3P53784 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sox3P53784 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.39■□□□□ 0.53
Sox3P53784 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.39■□□□□ 0.53
Sox3P53784 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sox3P53784 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Sox3P53784 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.39■□□□□ 0.53
Sox3P53784 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sox3P53784 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.39■□□□□ 0.53
Sox3P53784 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sox3P53784 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Sox3P53784 Gm20760-201ENSMUST00000179197 648 ntBASIC18.38■□□□□ 0.53
Sox3P53784 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.38■□□□□ 0.53
Sox3P53784 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sox3P53784 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sox3P53784 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.37■□□□□ 0.53
Sox3P53784 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.37■□□□□ 0.53
Sox3P53784 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.37■□□□□ 0.53
Sox3P53784 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Sox3P53784 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.37■□□□□ 0.53
Sox3P53784 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sox3P53784 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Sox3P53784 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Sox3P53784 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Sox3P53784 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sox3P53784 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.36■□□□□ 0.53
Sox3P53784 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC18.36■□□□□ 0.53
Sox3P53784 Mir7071-201ENSMUST00000184847 69 ntBASIC18.36■□□□□ 0.53
Sox3P53784 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.36■□□□□ 0.53
Sox3P53784 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.36■□□□□ 0.53
Sox3P53784 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sox3P53784 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sox3P53784 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Sox3P53784 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Sox3P53784 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.35■□□□□ 0.53
Sox3P53784 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox3P53784 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Sox3P53784 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.34■□□□□ 0.53
Sox3P53784 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.34■□□□□ 0.53
Sox3P53784 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Sox3P53784 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Sox3P53784 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.34■□□□□ 0.53
Sox3P53784 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox3P53784 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sox3P53784 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sox3P53784 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.33■□□□□ 0.53
Sox3P53784 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms