Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Rfx3P48381 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
Rfx3P48381 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.36■□□□□ 0.37
Rfx3P48381 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx3P48381 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Rfx3P48381 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.35■□□□□ 0.37
Rfx3P48381 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
Rfx3P48381 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.35■□□□□ 0.37
Rfx3P48381 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Rfx3P48381 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx3P48381 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Rfx3P48381 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC17.34■□□□□ 0.37
Rfx3P48381 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.34■□□□□ 0.37
Rfx3P48381 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx3P48381 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.34■□□□□ 0.37
Rfx3P48381 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Rfx3P48381 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx3P48381 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx3P48381 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx3P48381 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.33■□□□□ 0.36
Rfx3P48381 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx3P48381 Gm9847-201ENSMUST00000052528 599 ntBASIC17.33■□□□□ 0.36
Rfx3P48381 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx3P48381 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx3P48381 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rfx3P48381 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.33■□□□□ 0.36
Rfx3P48381 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.33■□□□□ 0.36
Rfx3P48381 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Gm9207-201ENSMUST00000198773 1115 ntBASIC17.32■□□□□ 0.36
Rfx3P48381 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
Rfx3P48381 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx3P48381 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Rfx3P48381 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx3P48381 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.31■□□□□ 0.36
Rfx3P48381 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Rfx3P48381 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx3P48381 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx3P48381 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rfx3P48381 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rfx3P48381 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx3P48381 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Rfx3P48381 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx3P48381 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC17.3■□□□□ 0.36
Rfx3P48381 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx3P48381 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx3P48381 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms