Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC21.04■□□□□ 0.96
HttP42859 Gm7367-201ENSMUST00000057611 492 ntBASIC21.04■□□□□ 0.96
HttP42859 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HttP42859 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
HttP42859 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HttP42859 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HttP42859 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HttP42859 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HttP42859 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HttP42859 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
HttP42859 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HttP42859 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
HttP42859 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
HttP42859 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
HttP42859 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HttP42859 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.02■□□□□ 0.96
HttP42859 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HttP42859 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HttP42859 Gm8668-201ENSMUST00000120559 1447 ntBASIC21.02■□□□□ 0.96
HttP42859 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HttP42859 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC21.02■□□□□ 0.95
HttP42859 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
HttP42859 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
HttP42859 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
HttP42859 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC21.01■□□□□ 0.95
HttP42859 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HttP42859 AC131586.2-201ENSMUST00000228370 1512 ntBASIC21.01■□□□□ 0.95
HttP42859 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.01■□□□□ 0.95
HttP42859 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21■□□□□ 0.95
HttP42859 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
HttP42859 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC21■□□□□ 0.95
HttP42859 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21■□□□□ 0.95
HttP42859 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21■□□□□ 0.95
HttP42859 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC21■□□□□ 0.95
HttP42859 Gm6659-201ENSMUST00000174752 547 ntBASIC21■□□□□ 0.95
HttP42859 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HttP42859 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HttP42859 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HttP42859 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HttP42859 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HttP42859 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HttP42859 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.98■□□□□ 0.95
HttP42859 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Gm15378-201ENSMUST00000121894 207 ntBASIC20.98■□□□□ 0.95
HttP42859 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HttP42859 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HttP42859 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.97■□□□□ 0.95
HttP42859 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HttP42859 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HttP42859 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.96■□□□□ 0.95
HttP42859 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HttP42859 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HttP42859 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HttP42859 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HttP42859 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HttP42859 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HttP42859 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HttP42859 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.95■□□□□ 0.95
HttP42859 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
HttP42859 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.95
HttP42859 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.95■□□□□ 0.95
HttP42859 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HttP42859 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.95■□□□□ 0.94
HttP42859 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms