Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.16■□□□□ 0.34
Ccl3P10855 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.16■□□□□ 0.34
Ccl3P10855 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ccl3P10855 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.16■□□□□ 0.34
Ccl3P10855 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Ccl3P10855 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ccl3P10855 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Ccl3P10855 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Ccl3P10855 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ccl3P10855 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.16■□□□□ 0.34
Ccl3P10855 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ccl3P10855 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC17.15■□□□□ 0.34
Ccl3P10855 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Ccl3P10855 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.15■□□□□ 0.34
Ccl3P10855 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ccl3P10855 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Ccl3P10855 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.14■□□□□ 0.33
Ccl3P10855 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.14■□□□□ 0.33
Ccl3P10855 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ccl3P10855 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ccl3P10855 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Ccl3P10855 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Ccl3P10855 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.13■□□□□ 0.33
Ccl3P10855 Gm26524-201ENSMUST00000192339 390 ntBASIC17.13■□□□□ 0.33
Ccl3P10855 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Ccl3P10855 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccl3P10855 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccl3P10855 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccl3P10855 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ccl3P10855 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.12■□□□□ 0.33
Ccl3P10855 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Ccl3P10855 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Trmt13-210ENSMUST00000198454 880 ntBASIC17.12■□□□□ 0.33
Ccl3P10855 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.12■□□□□ 0.33
Ccl3P10855 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.12■□□□□ 0.33
Ccl3P10855 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.12■□□□□ 0.33
Ccl3P10855 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccl3P10855 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.12■□□□□ 0.33
Ccl3P10855 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Ccl3P10855 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.12■□□□□ 0.33
Ccl3P10855 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.11■□□□□ 0.33
Ccl3P10855 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ccl3P10855 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccl3P10855 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.11■□□□□ 0.33
Ccl3P10855 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
Ccl3P10855 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.11■□□□□ 0.33
Ccl3P10855 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.11■□□□□ 0.33
Ccl3P10855 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccl3P10855 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccl3P10855 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccl3P10855 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.11■□□□□ 0.33
Ccl3P10855 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.1■□□□□ 0.33
Ccl3P10855 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Ccl3P10855 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Rab3c-203ENSMUST00000224180 967 ntBASIC17.1■□□□□ 0.33
Ccl3P10855 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.1■□□□□ 0.33
Ccl3P10855 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Gm10812-201ENSMUST00000099864 546 ntBASIC17.1■□□□□ 0.33
Ccl3P10855 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ccl3P10855 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Ccl3P10855 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Ccl3P10855 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccl3P10855 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms