Protein–RNA interactions for Protein: O88705

Hcn3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, mousemouse

Predictions only

Length 779 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hcn3O88705 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Hcn3O88705 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Rps24-207ENSMUST00000224568 714 ntBASIC18.44■□□□□ 0.54
Hcn3O88705 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.44■□□□□ 0.54
Hcn3O88705 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Hcn3O88705 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Hcn3O88705 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hcn3O88705 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hcn3O88705 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
Hcn3O88705 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Hcn3O88705 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.43■□□□□ 0.54
Hcn3O88705 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Hcn3O88705 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.43■□□□□ 0.54
Hcn3O88705 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.43■□□□□ 0.54
Hcn3O88705 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hcn3O88705 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.43■□□□□ 0.54
Hcn3O88705 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Hcn3O88705 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Gm45102-201ENSMUST00000207427 857 ntBASIC18.42■□□□□ 0.54
Hcn3O88705 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hcn3O88705 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Gm7417-201ENSMUST00000192950 473 ntBASIC18.41■□□□□ 0.54
Hcn3O88705 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.41■□□□□ 0.54
Hcn3O88705 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hcn3O88705 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.41■□□□□ 0.54
Hcn3O88705 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.4■□□□□ 0.54
Hcn3O88705 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.4■□□□□ 0.54
Hcn3O88705 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Hcn3O88705 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hcn3O88705 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.4■□□□□ 0.54
Hcn3O88705 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hcn3O88705 Gm14117-201ENSMUST00000122417 843 ntBASIC18.4■□□□□ 0.54
Hcn3O88705 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.4■□□□□ 0.54
Hcn3O88705 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hcn3O88705 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hcn3O88705 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Hcn3O88705 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Hcn3O88705 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.39■□□□□ 0.54
Hcn3O88705 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.39■□□□□ 0.53
Hcn3O88705 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.39■□□□□ 0.53
Hcn3O88705 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC18.39■□□□□ 0.53
Hcn3O88705 Gm7143-201ENSMUST00000222811 859 ntBASIC18.39■□□□□ 0.53
Hcn3O88705 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.39■□□□□ 0.53
Hcn3O88705 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Hcn3O88705 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hcn3O88705 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.38■□□□□ 0.53
Hcn3O88705 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Hcn3O88705 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Hcn3O88705 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Hcn3O88705 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Hcn3O88705 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hcn3O88705 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hcn3O88705 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hcn3O88705 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Hcn3O88705 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hcn3O88705 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hcn3O88705 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 184.9 ms