Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sdc4O35988 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sdc4O35988 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.9■□□□□ 0.78
Sdc4O35988 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Sdc4O35988 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.89■□□□□ 0.77
Sdc4O35988 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.89■□□□□ 0.77
Sdc4O35988 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.89■□□□□ 0.77
Sdc4O35988 Gm7514-201ENSMUST00000209475 934 ntBASIC19.89■□□□□ 0.77
Sdc4O35988 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Sdc4O35988 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sdc4O35988 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Sdc4O35988 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.88■□□□□ 0.77
Sdc4O35988 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
Sdc4O35988 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sdc4O35988 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Sdc4O35988 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.88■□□□□ 0.77
Sdc4O35988 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.87■□□□□ 0.77
Sdc4O35988 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.87■□□□□ 0.77
Sdc4O35988 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sdc4O35988 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Sdc4O35988 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Sdc4O35988 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Sdc4O35988 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Sdc4O35988 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sdc4O35988 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.86■□□□□ 0.77
Sdc4O35988 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc4O35988 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc4O35988 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Sdc4O35988 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc4O35988 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sdc4O35988 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Sdc4O35988 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
Sdc4O35988 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.84■□□□□ 0.77
Sdc4O35988 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.84■□□□□ 0.77
Sdc4O35988 Gm38205-201ENSMUST00000192243 258 ntBASIC19.84■□□□□ 0.77
Sdc4O35988 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.84■□□□□ 0.77
Sdc4O35988 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sdc4O35988 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.83■□□□□ 0.77
Sdc4O35988 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Sdc4O35988 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sdc4O35988 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sdc4O35988 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Sdc4O35988 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sdc4O35988 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc4O35988 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Sdc4O35988 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc4O35988 Gm13146-201ENSMUST00000118508 780 ntBASIC19.82■□□□□ 0.76
Sdc4O35988 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc4O35988 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc4O35988 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sdc4O35988 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Sdc4O35988 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms