Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gm6211-202ENSMUST00000167849 925 ntBASIC23.35■■□□□ 1.33
Ube4aE9Q735 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC23.35■■□□□ 1.33
Ube4aE9Q735 Gm20100-201ENSMUST00000209418 2272 ntBASIC23.35■■□□□ 1.33
Ube4aE9Q735 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
Ube4aE9Q735 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
Ube4aE9Q735 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4aE9Q735 Gm43859-201ENSMUST00000200075 1412 ntBASIC23.33■■□□□ 1.33
Ube4aE9Q735 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Gm10653-202ENSMUST00000139570 835 ntBASIC23.33■■□□□ 1.33
Ube4aE9Q735 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC23.33■■□□□ 1.33
Ube4aE9Q735 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ube4aE9Q735 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ube4aE9Q735 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ube4aE9Q735 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Ube4aE9Q735 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ube4aE9Q735 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ube4aE9Q735 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC23.32■■□□□ 1.32
Ube4aE9Q735 Gm5408-201ENSMUST00000197998 747 ntBASIC23.32■■□□□ 1.32
Ube4aE9Q735 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.31■■□□□ 1.32
Ube4aE9Q735 Gm12527-201ENSMUST00000117967 564 ntBASIC23.31■■□□□ 1.32
Ube4aE9Q735 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ube4aE9Q735 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC23.3■■□□□ 1.32
Ube4aE9Q735 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
Ube4aE9Q735 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4aE9Q735 AC131586.2-201ENSMUST00000228370 1512 ntBASIC23.29■■□□□ 1.32
Ube4aE9Q735 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC23.29■■□□□ 1.32
Ube4aE9Q735 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4aE9Q735 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4aE9Q735 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4aE9Q735 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4aE9Q735 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4aE9Q735 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC23.28■■□□□ 1.32
Ube4aE9Q735 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4aE9Q735 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Gm32699-201ENSMUST00000221728 1988 ntBASIC23.27■■□□□ 1.32
Ube4aE9Q735 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4aE9Q735 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Ube4aE9Q735 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC23.26■■□□□ 1.31
Ube4aE9Q735 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4aE9Q735 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ube4aE9Q735 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ube4aE9Q735 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ube4aE9Q735 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC23.25■■□□□ 1.31
Ube4aE9Q735 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ube4aE9Q735 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Ube4aE9Q735 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms