Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.93■□□□□ 0.46
Cdc40Q9DC48 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cdc40Q9DC48 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cdc40Q9DC48 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cdc40Q9DC48 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Cdc40Q9DC48 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Smad6-203ENSMUST00000179458 273 ntBASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Cdc40Q9DC48 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdc40Q9DC48 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Gm10493-201ENSMUST00000097270 612 ntBASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 AC165080.2-201ENSMUST00000217491 1530 ntBASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cdc40Q9DC48 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cdc40Q9DC48 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdc40Q9DC48 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdc40Q9DC48 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC17.86■□□□□ 0.45
Cdc40Q9DC48 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Cdc40Q9DC48 Gm29257-201ENSMUST00000186115 639 ntBASIC17.86■□□□□ 0.45
Cdc40Q9DC48 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms