Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Smc1aQ9CU62 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Smc1aQ9CU62 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smc1aQ9CU62 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Gm43060-201ENSMUST00000200621 289 ntBASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smc1aQ9CU62 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC21.47■■□□□ 1.03
Smc1aQ9CU62 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smc1aQ9CU62 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
Smc1aQ9CU62 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Gm10493-201ENSMUST00000097270 612 ntBASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smc1aQ9CU62 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smc1aQ9CU62 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Gm7291-201ENSMUST00000199147 382 ntBASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smc1aQ9CU62 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms