Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Six3Q62233 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.89■□□□□ 0.61
Six3Q62233 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.89■□□□□ 0.61
Six3Q62233 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.89■□□□□ 0.61
Six3Q62233 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.89■□□□□ 0.61
Six3Q62233 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Six3Q62233 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Six3Q62233 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.88■□□□□ 0.61
Six3Q62233 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Six3Q62233 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Six3Q62233 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Six3Q62233 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.88■□□□□ 0.61
Six3Q62233 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.88■□□□□ 0.61
Six3Q62233 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Six3Q62233 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Six3Q62233 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.87■□□□□ 0.61
Six3Q62233 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.87■□□□□ 0.61
Six3Q62233 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
Six3Q62233 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Six3Q62233 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.86■□□□□ 0.61
Six3Q62233 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
Six3Q62233 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Six3Q62233 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Six3Q62233 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Six3Q62233 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.85■□□□□ 0.61
Six3Q62233 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Gm9847-201ENSMUST00000052528 599 ntBASIC18.85■□□□□ 0.61
Six3Q62233 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Six3Q62233 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Six3Q62233 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Six3Q62233 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.84■□□□□ 0.61
Six3Q62233 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Six3Q62233 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Six3Q62233 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Six3Q62233 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Six3Q62233 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Six3Q62233 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Six3Q62233 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Six3Q62233 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
Six3Q62233 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Six3Q62233 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms