Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3bQ3ULL6 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3bQ3ULL6 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Gm43060-201ENSMUST00000200621 289 ntBASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Iqck-206ENSMUST00000208658 2891 ntBASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3bQ3ULL6 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3bQ3ULL6 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3bQ3ULL6 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3bQ3ULL6 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Upf3bQ3ULL6 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Upf3bQ3ULL6 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Upf3bQ3ULL6 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 82.1 ms