Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Limch1Q3UH68 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Limch1Q3UH68 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Spcs1-204ENSMUST00000226782 949 ntBASIC22.79■■□□□ 1.24
Limch1Q3UH68 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Limch1Q3UH68 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Limch1Q3UH68 AA386476-201ENSMUST00000098781 1665 ntBASIC22.77■■□□□ 1.24
Limch1Q3UH68 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Gm26833-201ENSMUST00000180899 440 ntBASIC22.77■■□□□ 1.24
Limch1Q3UH68 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.24
Limch1Q3UH68 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC22.77■■□□□ 1.24
Limch1Q3UH68 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Limch1Q3UH68 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Gm10616-201ENSMUST00000205285 2127 ntBASIC22.76■■□□□ 1.23
Limch1Q3UH68 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Limch1Q3UH68 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Limch1Q3UH68 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Gm29257-201ENSMUST00000186115 639 ntBASIC22.75■■□□□ 1.23
Limch1Q3UH68 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Limch1Q3UH68 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Gm20100-201ENSMUST00000209418 2272 ntBASIC22.74■■□□□ 1.23
Limch1Q3UH68 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Limch1Q3UH68 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Iqck-206ENSMUST00000208658 2891 ntBASIC22.73■■□□□ 1.23
Limch1Q3UH68 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC22.73■■□□□ 1.23
Limch1Q3UH68 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Limch1Q3UH68 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Limch1Q3UH68 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Limch1Q3UH68 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Limch1Q3UH68 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Limch1Q3UH68 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Limch1Q3UH68 Gm43060-201ENSMUST00000200621 289 ntBASIC22.71■■□□□ 1.23
Limch1Q3UH68 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC22.71■■□□□ 1.23
Limch1Q3UH68 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Limch1Q3UH68 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Limch1Q3UH68 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Gm10493-201ENSMUST00000097270 612 ntBASIC22.69■■□□□ 1.22
Limch1Q3UH68 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Limch1Q3UH68 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms