Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Hmgb1P63158 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.22■□□□□ 0.99
Hmgb1P63158 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Hmgb1P63158 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.21■□□□□ 0.99
Hmgb1P63158 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.21■□□□□ 0.99
Hmgb1P63158 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmgb1P63158 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Hmgb1P63158 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.99
Hmgb1P63158 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Hmgb1P63158 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.2■□□□□ 0.98
Hmgb1P63158 Gm9847-201ENSMUST00000052528 599 ntBASIC21.2■□□□□ 0.98
Hmgb1P63158 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Hmgb1P63158 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb1P63158 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Hmgb1P63158 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.19■□□□□ 0.98
Hmgb1P63158 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Hmgb1P63158 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.19■□□□□ 0.98
Hmgb1P63158 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
Hmgb1P63158 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.19■□□□□ 0.98
Hmgb1P63158 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb1P63158 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Hmgb1P63158 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.18■□□□□ 0.98
Hmgb1P63158 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Serp2-204ENSMUST00000228055 705 ntBASIC21.18■□□□□ 0.98
Hmgb1P63158 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.18■□□□□ 0.98
Hmgb1P63158 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
Hmgb1P63158 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmgb1P63158 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
Hmgb1P63158 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.17■□□□□ 0.98
Hmgb1P63158 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Hmgb1P63158 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Hmgb1P63158 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hmgb1P63158 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.16■□□□□ 0.98
Hmgb1P63158 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
Hmgb1P63158 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.16■□□□□ 0.98
Hmgb1P63158 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Hmgb1P63158 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Hmgb1P63158 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
Hmgb1P63158 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmgb1P63158 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb1P63158 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb1P63158 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.15■□□□□ 0.98
Hmgb1P63158 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb1P63158 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb1P63158 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Hmgb1P63158 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Hmgb1P63158 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Hmgb1P63158 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb1P63158 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.14■□□□□ 0.97
Hmgb1P63158 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms