Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
Cux1P53564 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Cux1P53564 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC30.29■■■□□ 2.44
Cux1P53564 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC30.29■■■□□ 2.44
Cux1P53564 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC30.29■■■□□ 2.44
Cux1P53564 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Cux1P53564 AC131586.2-201ENSMUST00000228370 1512 ntBASIC30.29■■■□□ 2.44
Cux1P53564 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Cux1P53564 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
Cux1P53564 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC30.28■■■□□ 2.44
Cux1P53564 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Cux1P53564 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC30.27■■■□□ 2.44
Cux1P53564 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
Cux1P53564 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC30.27■■■□□ 2.44
Cux1P53564 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC30.27■■■□□ 2.44
Cux1P53564 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
Cux1P53564 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
Cux1P53564 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
Cux1P53564 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC30.27■■■□□ 2.44
Cux1P53564 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC30.27■■■□□ 2.44
Cux1P53564 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cux1P53564 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.43
Cux1P53564 AC152827.1-201ENSMUST00000221143 2189 ntBASIC30.26■■■□□ 2.43
Cux1P53564 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC30.26■■■□□ 2.43
Cux1P53564 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC30.26■■■□□ 2.43
Cux1P53564 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Cux1P53564 Trmt13-210ENSMUST00000198454 880 ntBASIC30.26■■■□□ 2.43
Cux1P53564 Gm44878-201ENSMUST00000205812 1295 ntBASIC30.26■■■□□ 2.43
Cux1P53564 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Cux1P53564 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Cux1P53564 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
Cux1P53564 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
Cux1P53564 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Cux1P53564 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC30.25■■■□□ 2.43
Cux1P53564 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Cux1P53564 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
Cux1P53564 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC30.25■■■□□ 2.43
Cux1P53564 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Cux1P53564 Gm37563-201ENSMUST00000192580 1513 ntBASIC30.25■■■□□ 2.43
Cux1P53564 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Cux1P53564 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
Cux1P53564 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Cux1P53564 Gm27032-201ENSMUST00000183124 1116 ntBASIC30.24■■■□□ 2.43
Cux1P53564 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cux1P53564 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cux1P53564 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Cux1P53564 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
Cux1P53564 Gm27275-201ENSMUST00000184318 272 ntBASIC30.23■■■□□ 2.43
Cux1P53564 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC30.23■■■□□ 2.43
Cux1P53564 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Cux1P53564 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cux1P53564 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC30.23■■■□□ 2.43
Cux1P53564 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Cux1P53564 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
Cux1P53564 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Cux1P53564 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
Cux1P53564 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Cux1P53564 Rab3c-203ENSMUST00000224180 967 ntBASIC30.22■■■□□ 2.43
Cux1P53564 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cux1P53564 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC30.21■■■□□ 2.43
Cux1P53564 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cux1P53564 Gm17641-201ENSMUST00000166328 2350 ntBASIC30.21■■■□□ 2.43
Cux1P53564 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC30.21■■■□□ 2.43
Cux1P53564 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cux1P53564 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Cux1P53564 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC30.21■■■□□ 2.43
Cux1P53564 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cux1P53564 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
Cux1P53564 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
Cux1P53564 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Cux1P53564 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Cux1P53564 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC30.2■■■□□ 2.42
Cux1P53564 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC30.2■■■□□ 2.42
Cux1P53564 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
Cux1P53564 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
Cux1P53564 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Cux1P53564 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC30.19■■■□□ 2.42
Cux1P53564 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cux1P53564 Gm6802-201ENSMUST00000167843 1983 ntBASIC30.19■■■□□ 2.42
Cux1P53564 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cux1P53564 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Cux1P53564 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Cux1P53564 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cux1P53564 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC30.17■■■□□ 2.42
Cux1P53564 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC30.17■■■□□ 2.42
Cux1P53564 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cux1P53564 Gm44672-201ENSMUST00000206944 1098 ntBASIC30.17■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms