Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shmt1P50431 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Shmt1P50431 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.55■□□□□ 0.88
Shmt1P50431 Gm26571-201ENSMUST00000181399 666 ntBASIC20.55■□□□□ 0.88
Shmt1P50431 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.55■□□□□ 0.88
Shmt1P50431 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.55■□□□□ 0.88
Shmt1P50431 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Shmt1P50431 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shmt1P50431 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Shmt1P50431 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
Shmt1P50431 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.54■□□□□ 0.88
Shmt1P50431 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.54■□□□□ 0.88
Shmt1P50431 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Shmt1P50431 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shmt1P50431 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.53■□□□□ 0.88
Shmt1P50431 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.53■□□□□ 0.88
Shmt1P50431 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shmt1P50431 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Gm29257-201ENSMUST00000186115 639 ntBASIC20.52■□□□□ 0.88
Shmt1P50431 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Gm9988-201ENSMUST00000069786 435 ntBASIC20.52■□□□□ 0.88
Shmt1P50431 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Shmt1P50431 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Shmt1P50431 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
Shmt1P50431 Gm42642-201ENSMUST00000200683 355 ntBASIC20.51■□□□□ 0.87
Shmt1P50431 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shmt1P50431 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Shmt1P50431 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
Shmt1P50431 Reep4-203ENSMUST00000226563 1444 ntBASIC20.5■□□□□ 0.87
Shmt1P50431 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shmt1P50431 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Shmt1P50431 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Shmt1P50431 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.49■□□□□ 0.87
Shmt1P50431 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Shmt1P50431 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Shmt1P50431 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shmt1P50431 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Shmt1P50431 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shmt1P50431 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.48■□□□□ 0.87
Shmt1P50431 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Shmt1P50431 Gm10033-202ENSMUST00000211874 928 ntBASIC20.48■□□□□ 0.87
Shmt1P50431 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shmt1P50431 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Shmt1P50431 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Gm7291-201ENSMUST00000199147 382 ntBASIC20.47■□□□□ 0.87
Shmt1P50431 Gm42569-201ENSMUST00000200539 472 ntBASIC20.47■□□□□ 0.87
Shmt1P50431 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms