Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm6802-201ENSMUST00000167843 1983 ntBASIC24.22■■□□□ 1.47
Col4a1P02463 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC24.22■■□□□ 1.47
Col4a1P02463 Gm5408-201ENSMUST00000197998 747 ntBASIC24.22■■□□□ 1.47
Col4a1P02463 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Col4a1P02463 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
Col4a1P02463 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col4a1P02463 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC24.21■■□□□ 1.47
Col4a1P02463 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Col4a1P02463 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col4a1P02463 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col4a1P02463 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC24.21■■□□□ 1.47
Col4a1P02463 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC24.21■■□□□ 1.47
Col4a1P02463 Gm20049-201ENSMUST00000219950 730 ntBASIC24.21■■□□□ 1.47
Col4a1P02463 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col4a1P02463 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC24.2■■□□□ 1.46
Col4a1P02463 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col4a1P02463 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
Col4a1P02463 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col4a1P02463 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col4a1P02463 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Col4a1P02463 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col4a1P02463 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC24.19■■□□□ 1.46
Col4a1P02463 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Col4a1P02463 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col4a1P02463 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC24.18■■□□□ 1.46
Col4a1P02463 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC24.18■■□□□ 1.46
Col4a1P02463 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
Col4a1P02463 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC24.18■■□□□ 1.46
Col4a1P02463 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col4a1P02463 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col4a1P02463 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col4a1P02463 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col4a1P02463 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Col4a1P02463 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
Col4a1P02463 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Gm7290-201ENSMUST00000104990 617 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Gm12918-201ENSMUST00000120234 636 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Gm15710-201ENSMUST00000121821 636 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Gm37856-201ENSMUST00000191634 999 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Gm5075-201ENSMUST00000196916 622 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC24.16■■□□□ 1.46
Col4a1P02463 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC24.16■■□□□ 1.46
Col4a1P02463 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC24.16■■□□□ 1.46
Col4a1P02463 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Col4a1P02463 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col4a1P02463 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
Col4a1P02463 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Col4a1P02463 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Col4a1P02463 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Col4a1P02463 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Col4a1P02463 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Col4a1P02463 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC24.14■■□□□ 1.45
Col4a1P02463 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Col4a1P02463 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
Col4a1P02463 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col4a1P02463 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC24.13■■□□□ 1.45
Col4a1P02463 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Col4a1P02463 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col4a1P02463 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC24.13■■□□□ 1.45
Col4a1P02463 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Col4a1P02463 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Col4a1P02463 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col4a1P02463 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Col4a1P02463 AC131586.2-201ENSMUST00000228370 1512 ntBASIC24.12■■□□□ 1.45
Col4a1P02463 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col4a1P02463 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col4a1P02463 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Col4a1P02463 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Col4a1P02463 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col4a1P02463 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Col4a1P02463 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col4a1P02463 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Col4a1P02463 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC24.11■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms