Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Pcdha4O88689 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdha4O88689 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdha4O88689 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.7■■□□□ 1.06
Pcdha4O88689 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.7■■□□□ 1.06
Pcdha4O88689 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdha4O88689 Gm10493-201ENSMUST00000097270 612 ntBASIC21.7■■□□□ 1.06
Pcdha4O88689 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdha4O88689 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdha4O88689 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
Pcdha4O88689 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Pcdha4O88689 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.69■■□□□ 1.06
Pcdha4O88689 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.69■■□□□ 1.06
Pcdha4O88689 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.69■■□□□ 1.06
Pcdha4O88689 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Pcdha4O88689 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
Pcdha4O88689 Gm18284-201ENSMUST00000172604 624 ntBASIC21.68■■□□□ 1.06
Pcdha4O88689 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdha4O88689 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdha4O88689 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.67■■□□□ 1.06
Pcdha4O88689 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdha4O88689 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Pcdha4O88689 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdha4O88689 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdha4O88689 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
Pcdha4O88689 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdha4O88689 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.65■■□□□ 1.06
Pcdha4O88689 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Pcdha4O88689 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdha4O88689 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Pcdha4O88689 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.64■■□□□ 1.06
Pcdha4O88689 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.64■■□□□ 1.05
Pcdha4O88689 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
Pcdha4O88689 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Pcdha4O88689 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.64■■□□□ 1.05
Pcdha4O88689 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Pcdha4O88689 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Pcdha4O88689 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.63■■□□□ 1.05
Pcdha4O88689 Gm5874-201ENSMUST00000096101 508 ntBASIC21.63■■□□□ 1.05
Pcdha4O88689 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.63■■□□□ 1.05
Pcdha4O88689 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdha4O88689 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Pcdha4O88689 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Pcdha4O88689 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdha4O88689 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
Pcdha4O88689 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.62■■□□□ 1.05
Pcdha4O88689 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.62■■□□□ 1.05
Pcdha4O88689 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.62■■□□□ 1.05
Pcdha4O88689 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdha4O88689 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdha4O88689 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdha4O88689 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdha4O88689 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Pcdha4O88689 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.61■■□□□ 1.05
Pcdha4O88689 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.61■■□□□ 1.05
Pcdha4O88689 Gm8495-201ENSMUST00000188740 694 ntBASIC21.61■■□□□ 1.05
Pcdha4O88689 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms